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Have you tried dimensional doors?
I've got ideas. Do you have a reference for what you can do?
The conduits from Ender IO are just about the coolest item/energy/fluid transfer pipes that I have ever used. They are neat, modular and intuitive.
Unfortunately, the Ender IO mod seems to have been inactive for a while and minecraft is moving on in versions. I don't really care about the rest of the mod, but the conduits have got to be saved!
I'd do it myself, but I'm not even sure where to start with coding pipes and stuff like that. I have made a model for the conduits though!
Anyway, if anyone is interested in making this, I'd pay you for it.